2020. 2. 22. 01:13ㆍ카테고리 없음
The IonReporterUploader plugin See the for complete information on the IonReporterUploader plugin. A brief description is included below. Overview The IonReporterUploader plugin transfers results files directly from a Torrent Suite Software analysis to your Ion Reporter Software organization (available under separate license). You include the Uploader plugin settings in the run plan that you use for your sequencing run. W hen your Torrent Suite Software analysis completes, t he run plan automatically launches the plugin and begins your file transfer. After the transfer, your I on Reporter Software is automatically launched.
One-time manual launch from a completed run report (with the Select plugins to run button) is also supported. Manual plugin launch does not support automatic I on Reporter Software workflow launch. Integration with Ion Reporter Software Ion Reporter Software uses the Torrent Suite Software output BAM file for analysis. The Ion Reporter Software annotation-only workflow also accepts the VCF output file of the Torrent Variant Caller plugin. Use the IonReporterUploader plugin to transfer these output files to Ion Reporter Software.
In a run plan template wizard, you can set up the IonReporterUploader plugin to automatically transfer the output files to Ion Reporter Software, after each completion of your Torrent Suite Software analyses. See for an overview of Torrent Suite Software output files and how these files are used with Ion Reporter Software. Command-line version of the Uploader A UNIX command-line version of the Uploader is available. The command-line Uploader runs on any standard UNIX box (and is not limited to Torrent Servers). Download the command-line Uploader from your I on Reporter Software profile.
Instructions for the command-line Uploader available in the command-line version and are included with the I on Reporter Software documentation (which is also downloaded from your I on Reporter Software profile and available in the I on Reporter Software help ).
Please see buildTools/BUILD.txt for build requirements and instructions. Note especially the section BUILD SPECIFIC MODULES.
To build Analysis module, the command is: MODULES=Analysis./buildTools/build.sh Tips: - If you are building this software for the first time, it's suggested to use a Docker container to build. That will reduce the chance of being blocked by any environment dependencies.
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Note that the code that was formerly in the ion-alignment and tmap packages is now rolled into the ion-analysis packages - For standalone Torrent Variant Caller, please see the below link for instructions. There are supported Docker containers for various platform.